NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151652_11368543

Scaffold Ga0151652_11368543


Overview

Basic Information
Taxon OID3300011340 Open in IMG/M
Scaffold IDGa0151652_11368543 Open in IMG/M
Source Dataset NameCombined Assembly of Wetland Metatranscriptomes
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)730
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Wetland → Microbial Community Impact On Carbon Sequestration In Managed Wetland Carbon Farming

Source Dataset Sampling Location
Location NameTwitchell Island, Sacramento and San Joaquin Delta, California, USA
CoordinatesLat. (o)38.107Long. (o)-121.6475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056992Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0151652_113685432F056992N/AMDSSSLKLLGQFVDSDRAEVVDARATGGEVIRIPFREMVLPAAALSAVADNLSWFMEQLTGRGYQKAEEVYGAGFTVREPGRNAYGLKVAAEGPVVIVARVSLLEDETIFQRYVNYLRTGVLL*
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