NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153936_100655

Scaffold Ga0153936_100655


Overview

Basic Information
Taxon OID3300011380 Open in IMG/M
Scaffold IDGa0153936_100655 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from New Jersey, USA - TSNJ020 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10029
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (52.94%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: New Jersey, Wharton State Forest
CoordinatesLat. (o)39.7782Long. (o)-74.6305Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000488Metagenome1084Y
F000950Metagenome822Y
F035583Metagenome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0153936_1006551F035583N/AVQILRTLHLYGILSPWDLFMAKRSALKRASQWSLKQTITLSGSQDISDLVSGNLVITD*
Ga0153936_10065510F000488N/AMPAIRNTKTLAKHLLLKKESMTEKSLLERIGMESTLSTKLYDRLVEADPCWYKVDDFYFVSYPLELHFCKTKKLLCIKEYKELLEPTLDCILPFFTKMSKNKTWAEDPQYDLL*
Ga0153936_1006557F000950GAGMKMLEEDSDDPNSPPEDVRINSVSIEEIFDPVPPSGKEKGIPKLDFPLGL*
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