NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102688_1683124

Scaffold Ga0102688_1683124


Overview

Basic Information
Taxon OID3300011381 Open in IMG/M
Scaffold IDGa0102688_1683124 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel7S_1600h metaT (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1308
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043229Metagenome / Metatranscriptome156N
F096608Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0102688_16831242F096608GAGMNPKTELVKEILQIIDTLTPMEIKIIPESVVLKLYQLKKRVKELDPSWEFNDPYNHYIFRILILLDALEVDGTFSLEKHGKICQMMHREVRDIRRINSLWRMNTSLVVEFINSTPLKEEEKEREKDKLSENPVDKEGSSPFKK*
Ga0102688_16831243F043229N/AMTQKGVKLEIETIEECGCEPHECYCRHNKEYKKSMKIRNLTTMIGLIEADAPLSFRALERICELKKKIKRIDPEWILVDEVKLLEHQVLSQLDTIDHTIPWNSARNKLRYIDLCQTINKLKIIHPDWEMDLEDSKNHYLCRCRSCLEKERCISRH*
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