NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0154002_1003114

Scaffold Ga0154002_1003114


Overview

Basic Information
Taxon OID3300011393 Open in IMG/M
Scaffold IDGa0154002_1003114 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from New York, USA - TSNY086 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5045
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: New York, Robert Cushman Murphy County Park
CoordinatesLat. (o)40.8926Long. (o)-72.8224Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008983Metagenome324Y
F022125Metagenome215Y
F083492Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0154002_10031142F022125AGGAGLEVEESIWKKGVRKDASMKDLGPCHRIKKGIYAKKEESIFTIKRGKGGSTDICRRPVEKGIYPTLQVTPDIAGTLCGEKGWHTENGTRLSTHKPVDDKKWVPLTPYCRYIGWSRKEKGVYEVEFEMEIQ*
Ga0154002_10031147F083492GAGMLRNAHQGTSLLLKNYIDQVLNGAINHYNSTLTTAYNRIATLEAEVIHLWGELTRLPRGNIASKTKVPEPPTFAGSENKMHLHDWLN*
Ga0154002_10031149F008983N/AMQAYKALHLDKTQSTIFGPKTIGEKSGGKKDLDAMEIDEIQ
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