Scaffold Ga0153970

Basic Information
Taxon OID	3300011394 Open in IMG/M
Scaffold ID	Ga0153970_1000004 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA054 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300011394 Open in IMG/M

Scaffold ID

Ga0153970_1000004 Open in IMG/M

Source Dataset Name

Attine ant fungus gardens microbial communities from Georgia, USA - TSGA054 MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26975
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (42.42%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

26975

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (42.42%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Ecosystem

Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: Georgia, George L Smith State Park
Coordinates	Lat. (^o)	32.5455	Long. (^o)	-82.1221	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia, George L Smith State Park

Coordinates

Lat. (^o)

32.5455

Long. (^o)

-82.1221

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000383	Metagenome	1208	Y
F006376	Metagenome	374	Y
F019419	Metagenome	229	Y
F025893	Metagenome	199	Y
F051605	Metagenome	143	Y
F080720	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153970_100000415	F025893	GAG	MDVRQLTTEQWEELIEDLLALKDAVLIVEACPPKEKDFV*
Ga0153970_100000416	F019419	AGTAG	MGTPIDEVVGGGFRVTRGGGARGNLAMDNGEGRAETVLSDVEGAERNTDWKASFARCTWSILYAALYHTSGSVSAGHP*
Ga0153970_100000418	F051605	N/A	MMRLLISSDNCVLGFLDAETIDSLLDNVVVDLVSGGGGDGRIKITSSLSLFSFGRIISLTHGREVN*
Ga0153970_100000419	F080720	GAG	MSSFTNTTTNASTMAVSLTWNQEIYNKIICCNNRTKDWASKMDCIIQAIEAMAGLEEKAEKLVRMADIINNTMADTETGTLLAGEGYCTDIATQFYEVAKTLRLILHDILSQ*
Ga0153970_100000429	F006376	N/A	VIGAFQSIDYVRFHVNWEKVNLELLLKVSPGLDEENASVHFLMKYVFRPLGDMTTFEECESPKNSLFFIMELFRGQVDV*
Ga0153970_100000431	F025893	N/A	MDVCQLTTEQQEELVEDLLTLKDIVPIEESCFPEEEEDFA*
Ga0153970_10000049	F000383	N/A	MVFFTLRRASVHLHFSSLPIDLQVMVLKPGITKDHVLPSEAENSEEPPFGVGFVTENHVYHFRDLICLVGGAVHVVHWYGAKDALGVNTFCLDEVLIYEVARSSRVQKHLDGIYLAGICGADFYWKDD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153970_1000004

Overview

Ecosystem & Geography

Associated Families

Sequences