Scaffold Ga0153970

Basic Information
Taxon OID	3300011394 Open in IMG/M
Scaffold ID	Ga0153970_1000095 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA054 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300011394 Open in IMG/M

Scaffold ID

Ga0153970_1000095 Open in IMG/M

Source Dataset Name

Attine ant fungus gardens microbial communities from Georgia, USA - TSGA054 MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14765
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (63.64%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

14765

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (63.64%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Ecosystem

Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: Georgia, George L Smith State Park
Coordinates	Lat. (^o)	32.5455	Long. (^o)	-82.1221	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia, George L Smith State Park

Coordinates

Lat. (^o)

32.5455

Long. (^o)

-82.1221

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000523	Metagenome	1050	Y
F000591	Metagenome	1003	Y
F004107	Metagenome	452	Y
F022328	Metagenome	214	Y
F029615	Metagenome	187	Y
F029616	Metagenome	187	Y
F039422	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153970_10000951	F000523	AGAAGG	MIKRRLWRTIKDIGAENDLLNDLGFNLCVAFWSPIVRLVAYFGVVEVVEAEVLSGQVEESERIRCN*
Ga0153970_100009514	F000523	N/A	VIAKPERRLWWTIKDVRAKNDLLNDLGFNLCVMPQSPVVRLVVYFRVIEVVETEVLSGQVEESERIRYD*
Ga0153970_100009515	F022328	GAGG	VDRDGDLTIEDGCLEGFRELWDGVVCGRVVDDWRQDRAELCEEAEY*
Ga0153970_100009517	F004107	GAG	LGLDGDVSDGVNCRGFSAGENRGFTKVSTGGTKAGLWSKDGGRKDIDPETQSINGL*
Ga0153970_100009518	F029616	N/A	MGIFLQINSEVIRIMGSECFCFGLAKNICVLMIFLWNRGEVDFFEYGSGFGLYCRTELESKYFQA*
Ga0153970_10000952	F029615	N/A	MSIGTPIDGVVGRGFGMTGGSRARNNLAADNGGDRAETVLSDAEGAEHDMD*
Ga0153970_10000953	F039422	GGAG	VSIVPISTGRSREVPRASRALIKKSLGSLFSYLGLWSRAKTRGIEGNASTSSLLIILGSSIVNIVNLFTGDWGTLITGHTIQNPLPPEDKTLLSELHLSTPTDLQSTPPAALW*
Ga0153970_10000958	F000591	N/A	MEMEVSPYIHLPFKIATSQSDGLGMKNVVELRRSDVSQSSGVFAMKLHCEFWCRDFRSGLPGIVFMAISLPLNEVLESSPVPTTIKYFLYFLLHFSVDDYGWWVVLYHASCNRVVWGWSKFYYIEY*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153970_1000095

Overview

Ecosystem & Geography

Associated Families

Sequences