Scaffold Ga0153970_1000162

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153970_1000162

Scaffold Ga0153970_1000162

Overview

Basic Information
Taxon OID	3300011394 Open in IMG/M
Scaffold ID	Ga0153970_1000162 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA054 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12968
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: Georgia, George L Smith State Park
Coordinates	Lat. (^o)	32.5455	Long. (^o)	-82.1221	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026754	Metagenome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153970_10001625	F026754	N/A	MSLDFILYSTTNFHSCSIRTLIDVLAQILDSSQSSRDLNIEITMKKKEKLRPHIDCELGPIVFKNQATVRLSIEWITLLSPICSLSKVLGKAFTILSIDHILGLGVVSIT*

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