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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300011394 Open in IMG/M |
| Scaffold ID | Ga0153970_1000870 Open in IMG/M |
| Source Dataset Name | Attine ant fungus gardens microbial communities from Georgia, USA - TSGA054 MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7031 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (44.44%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Psathyrellaceae → Coprinopsis → Coprinopsis cinerea | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia, George L Smith State Park | |||||||
| Coordinates | Lat. (o) | 32.5455 | Long. (o) | -82.1221 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001569 | Metagenome | 669 | Y |
| F002648 | Metagenome | 539 | Y |
| F006537 | Metagenome | 370 | Y |
| F041522 | Metagenome | 159 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0153970_10008702 | F041522 | N/A | MSWGDWVLLVIFCDKVWCLDIGGHLLRVVFSAEAFPLNQELEPPPVPATIQYLFHFPLWFSVDNNGWWQGSWLPSWYQIIQSGRQLDHIEHWVQLSQSVGQFKSVG* |
| Ga0153970_10008707 | F001569 | N/A | LFLSYYTASFILRGTLVHLHFSGLPIDLQIMVLEPGVAKDHALLSKVRDSEEHPFRVGLITEDYIYHFGDSSCFVRGAVHVEHWYGTRDVLGANTLCINKVFIYEVVCSSGVQKRLDRMYFTSVSSTDLYRKDDRHSAGVKGVGEESSR* |
| Ga0153970_10008708 | F006537 | GGAGG | MDVDVVRKARSLPLQEYYRCREANHLIRDCLHHLDIQKLTVEQQEELIEDLMALKDAVEEEEVGSTPEEDFV* |
| Ga0153970_10008709 | F002648 | GAGG | LDHLAVHPSLKKARVHKIFSSLQLKCSRARHKYNIQELKKARPELHSPEKSGGEGSFGLVYCLDGVDRTGKGGLTGGGDMGIRGRATVGAGAVIS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |