NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153970_1001252

Scaffold Ga0153970_1001252


Overview

Basic Information
Taxon OID3300011394 Open in IMG/M
Scaffold IDGa0153970_1001252 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Georgia, USA - TSGA054 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6006
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Georgia, George L Smith State Park
CoordinatesLat. (o)32.5455Long. (o)-82.1221Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022328Metagenome214Y
F029616Metagenome187Y
F032494Metagenome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0153970_100125210F022328GGAGVDGNSDLTMEDGRLEGFWELRDGAVCGGVMDDWGRDGAELCEEAEY*
Ga0153970_10012524F032494GAGMMKQEYKYLMIARETAEKYKYPSFATETVFEYKYQTATETAERNTSKQVSAKETALRNVYNYSRIYIYIFEVKK*
Ga0153970_10012529F029616N/AMGIFFQIDSEVVRTVGSECFCFGLAKNICVLVIFLWNGGEVDFFGDGNGFGLYCGTELNSKYF*
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