NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153970_1003306

Scaffold Ga0153970_1003306


Overview

Basic Information
Taxon OID3300011394 Open in IMG/M
Scaffold IDGa0153970_1003306 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Georgia, USA - TSGA054 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3561
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Georgia, George L Smith State Park
CoordinatesLat. (o)32.5455Long. (o)-82.1221Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002648Metagenome539Y
F035142Metagenome172Y
F057804Metagenome135Y
F088011Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0153970_10033061F035142N/AMFGQLLKMVLQVAQGVSDGWGGVCREQHLSWSGVIRELEFVSGGRLEGSCPLRNSGALARRSNSAVRATEGDSRRFLS*
Ga0153970_10033062F002648AGGAMPVSASWRKRFSDHFAARLSLKKARVQKIFSSSQMNCSGARHKYSVQELRKAHPELRLPEKSGGEGSFGLVRCLDRAAGTGEGELTGGRETVGTRAVMS*
Ga0153970_10033063F057804GGAMSMSTPPDSAGRGGGGLGGMESRAAGEERSTEKGVGRARAEHAGVTVVDQSVDWNALFANHAWSILRAAAYQASGSVSAGRPKSIVAI*
Ga0153970_10033064F088011GAGGVKDCSHRLDVQRLTAEQREELIEDLMALKDAVEEEEVCSAPEEGFV*
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