NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153970_1006172

Scaffold Ga0153970_1006172


Overview

Basic Information
Taxon OID3300011394 Open in IMG/M
Scaffold IDGa0153970_1006172 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Georgia, USA - TSGA054 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2463
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Georgia, George L Smith State Park
CoordinatesLat. (o)32.5455Long. (o)-82.1221Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002648Metagenome539Y
F057804Metagenome135Y
F093005Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0153970_10061724F002648GAGGLDHFAARPFLKKARVQKIFSLSQVNCSRARCKYNIQKLRKARPELCLLEKSQGEGSFGLICYLDKAARTREGEVTGGRDMGIGGGVTTGAGAGPVMS*
Ga0153970_10061725F057804N/AMGIPPDGIGRGEGGLGRTEGRATRGERSTDKEVGQVGVERAGVTVVDQSVDWNTSFANYAWLILWTAVYQASRSVLAGRSKGMVAI*
Ga0153970_10061726F093005GAGVKDCPHCLDVWRLTTEQRKELIEDLMALKDTVEEEEVCSAPEKDFA*
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