NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0153970_1008253

Scaffold Ga0153970_1008253


Overview

Basic Information
Taxon OID3300011394 Open in IMG/M
Scaffold IDGa0153970_1008253 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Georgia, USA - TSGA054 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2076
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Georgia, George L Smith State Park
CoordinatesLat. (o)32.5455Long. (o)-82.1221Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000383Metagenome1208Y
F049332Metagenome146Y
F093005Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0153970_10082533F049332AGAAGMETRALNICWSRPSPEYVEDSEEDEAPVRTSEAEYEPGDQLFMTRILLDSTVEDLRAVSTTSQKLAERAH*
Ga0153970_10082534F000383N/ALFLSYHTASFALRRTLVHLHFSSLPIDLQVVLEPGITEDHALPSKTGDSEERPFGVSFVIENHVYYFKDLTCLVGGAIHIVHRYGTKDALGVNAFRLDKVSIYEVARSSGVQKCLDRMHLAGVCGADFYWQDD*
Ga0153970_10082535F093005AGGALDVWRLTTEQREELIEDLMALKDAVEAEEVCSAPEEGFV*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.