NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153970_1013963

Scaffold Ga0153970_1013963


Overview

Basic Information
Taxon OID3300011394 Open in IMG/M
Scaffold IDGa0153970_1013963 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Georgia, USA - TSGA054 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1521
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Georgia, George L Smith State Park
CoordinatesLat. (o)32.5455Long. (o)-82.1221Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006878Metagenome362Y
F015953Metagenome250Y
F018491Metagenome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0153970_10139632F018491GAGMKLKEMRLRNYLQHTEKRNQVRHSWRLRGLGGWTILRREGKGTRVLLQELDKVLDSWH*
Ga0153970_10139633F006878AGGMGKPAAVGKDISTCFHLAMATRTLGALCREKVLSELPNGSMVKDDSSRPGTQGDRLANKQKPAPTFSIGGLEEVLDTTFEREEVTTLR*
Ga0153970_10139634F015953GAGMITMHLMSKEVALTTPSQIANNSASRAVARPAGALDDDTCSPSLQKWATETACIFLGGITLASVATTSIDGSEEAS*
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