NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0153960_1000564

Scaffold Ga0153960_1000564


Overview

Basic Information
Taxon OID3300011396 Open in IMG/M
Scaffold IDGa0153960_1000564 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Florida, USA - TSFL044 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7960
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Florida, Withalacochee
CoordinatesLat. (o)28.5713Long. (o)-82.2846Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000523Metagenome1050Y
F015172Metagenome256Y
F018112Metagenome236Y
F022328Metagenome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0153960_100056410F022328GAGGVDGDGDLMMEDGRLEGFWEPRDGTVCGGVVDVWGRDRAELCEEAEN*
Ga0153960_100056412F015172GGAGMSGRDVLSDGRKKTPTMRQGHWGGERLIERPWLQLICCAPVSGREVGRVFRSKGSRQDRGPKESSEGAGVDKMRLGPDDVNLQTEELHSNYSVLIVSAE*
Ga0153960_10005642F000523N/AMYLAMIERRLQQTVKDVRAENDLLNDLGFNLCVAPRSPVVRLVTYFGVVEVIETEVLSSRVEELERIRCD*
Ga0153960_10005649F018112AGAAGMHSLEGNFTGNDTTSEIILFEVPSNRCSSTGGVGVVDRECPQAKAESKKQCVDPESTSVRMGIGWRWSRAHTRGETRGIQREFGSERADALRRIGLVVAQTSSM*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.