NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153960_1001018

Scaffold Ga0153960_1001018


Overview

Basic Information
Taxon OID3300011396 Open in IMG/M
Scaffold IDGa0153960_1001018 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Florida, USA - TSFL044 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6243
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (38.46%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Florida, Withalacochee
CoordinatesLat. (o)28.5713Long. (o)-82.2846Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000383Metagenome1208Y
F001585Metagenome667Y
F058578Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0153960_100101812F001585N/ALGSAVGDNTFWEAVELLDMVKKESGCSFRCDRCVHRNKVYSLGDGIYNSHDSVMSGGLQEFDHKIDTEHIPLCIQNGKQLKLTNWGVSPGFHLEAKITGTYILANIPRHLRPPVVLGHQF
Ga0153960_10010185F000383N/AVTSFISRRALVHLYFSGLPIDLWVVVLEPGITKDHVLPSKARDSKERPFRVGFVTEDYIYYFGDLTCLVGGAIHIVYQYGVRDALGINTFHTDEVSIYEVARSSGVQKCLDGMHLTGVCGADFYWKDD*
Ga0153960_10010186F058578AGGAMIQKEQVSQKRMETRALNVCQSEPPPEYAEDSEENKIPIRTHEAEYEQGDRLFMIRILLESTAEDLRAASTTSQKLVEGAHQSVEAWREPFILPNCVRGFESVFAEEDFDILPEHRQ*
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