NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153960_1001083

Scaffold Ga0153960_1001083


Overview

Basic Information
Taxon OID3300011396 Open in IMG/M
Scaffold IDGa0153960_1001083 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Florida, USA - TSFL044 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6029
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Florida, Withalacochee
CoordinatesLat. (o)28.5713Long. (o)-82.2846Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013968Metagenome266Y
F028987Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0153960_10010835F013968N/AVIERREELCNVKGNYTSLEALGPARANQVSKEKSSIFSRPLSNATKLVGIKDTMLNSIKLELPSNYLLNELAKGVEQDNRSKGLRSIVGWFARLRDNDRD*
Ga0153960_10010838F028987GAGMFWETMEFPDVMEKKSGYSFCCDHCVCQNEVHSFGDRVHDSHDGVMSGGLWEFDHKIDTKHVPLFVQNGEQMELANRRVSPRFCLEAEVTGTHILANVPRHLGPPVILGH*
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