NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153960_1001287

Scaffold Ga0153960_1001287


Overview

Basic Information
Taxon OID3300011396 Open in IMG/M
Scaffold IDGa0153960_1001287 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Florida, USA - TSFL044 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5617
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Psathyrellaceae → Coprinopsis → Coprinopsis cinerea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Florida, Withalacochee
CoordinatesLat. (o)28.5713Long. (o)-82.2846Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000709Metagenome925Y
F029614Metagenome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0153960_10012872F029614N/ALVVRGALQSINGICFCIDQEELTPELSFEVGPRLDRKNAGVHLLAKEIFGPPHGTSVFEEGECSKDFLLIAAELLWSQV*
Ga0153960_10012875F000709N/AMVLEPGVAKDHALLPEVRDGKEHPFGVGLIIENYIHYFGDLSCFVRGAVHVEHWYGTRDALGTNTFRIDKILVYKVAGGSGVQKRFDGMHLAGVGGTNLYRQDDRCFTGIEGVGGESSGELFFLFGPLRQGCPDRSGGDRRGVSIGS*
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