Scaffold Ga0137312_1029923

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0137312_1029923

Scaffold Ga0137312_1029923

Overview

Basic Information
Taxon OID	3300011400 Open in IMG/M
Scaffold ID	Ga0137312_1029923 Open in IMG/M
Source Dataset Name	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT133_2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	825
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.8897	Long. (^o)	-106.908	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007942	Metagenome / Metatranscriptome	342	Y
F072059	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137312_10299231	F072059	GAG	MTAPPWQEDDPKNLSLIQSNAAQLINELQAVAAERTIPTSEELCRWHARLYAGCDVPVAGYVGHFRGDQTVKELVDYEVGLGVRLKDGNLEKMG
Ga0137312_10299232	F007942	GGA	MASRAVFPLRWRNERLRALTAEVAARLGISQNELIEQAIEHEVVARGAMLSEDLRAAADRLAELTQEQYERIQARGLEIFVAGEGLLEPVQAHLTSRKAAADSVAVDRPPVARDVTAIYRSARTELA*

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