NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153984_1001933

Scaffold Ga0153984_1001933


Overview

Basic Information
Taxon OID3300011401 Open in IMG/M
Scaffold IDGa0153984_1001933 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Georgia, USA - TSGA068 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4287
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricineae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Georgia, Alexander Wildlife Management Area
CoordinatesLat. (o)33.0108Long. (o)-81.8997Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005168Metagenome409Y
F040415Metagenome161Y
F053686Metagenome140Y
F089631Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0153984_10019333F053686GAGGVVKEREELSNIKGKTARMTLSEPASPDKMSKVYFCICCGSLPDTPELMRVDKAIG*
Ga0153984_10019335F089631GGAGMGMRLAMALMPSDGEVWKAPVIQRAALCCIFFSSVMFFTIGAPLKNHN*
Ga0153984_10019336F005168GAGGMLVKVLIRGRRREMKANSTREMIDYPRSRGEEGVKGIEAVSNAVELLIDILDRALEVGLLFHSEFGHYSFVGCLILSMLGI*
Ga0153984_10019338F040415AGGVDKTIDNDIAWTHGGVVSITFHDDVFLGLNFSFATRAASREVGEESLFVFSNRGMASGHAGEVSA*
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