NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153984_1024476

Scaffold Ga0153984_1024476


Overview

Basic Information
Taxon OID3300011401 Open in IMG/M
Scaffold IDGa0153984_1024476 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Georgia, USA - TSGA068 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1332
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Georgia, Alexander Wildlife Management Area
CoordinatesLat. (o)33.0108Long. (o)-81.8997Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006878Metagenome362Y
F017770Metagenome238Y
F018491Metagenome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0153984_10244762F018491AGAAGMPRIQSQVKLREVRLRNYLQHTEERNQVRHSWRLRGLSRRAILRREGKSTRMLLQELDKVLDSWH*
Ga0153984_10244763F006878AGGMGKPAAVGKDVSTCFHLAMATRTLGALCREKVLSKLPNGSMVKNGSSRPSTQGDRLANEGKPAPTFSIEGLEKVLDTTFEREEVATLR*
Ga0153984_10244764F017770AGTAGMASSSNLGTSSVFMCQEVKGPLNLAWAVPEVDGVIRVIGEETSKGLDDSKGVDLA*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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