NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0153984_1027864

Scaffold Ga0153984_1027864


Overview

Basic Information
Taxon OID3300011401 Open in IMG/M
Scaffold IDGa0153984_1027864 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from Georgia, USA - TSGA068 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1243
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Georgia, Alexander Wildlife Management Area
CoordinatesLat. (o)33.0108Long. (o)-81.8997Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015042Metagenome257Y
F086400Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0153984_10278641F015042N/AMSCQSAAPSSGSNSIPLADRTISHFTSGLPRRSRRLQLGTPRTLVRPRSFPPSVEPSEFHGVDPATISHIDDDLDWVDAPIPVPTPVFQTPPVADHNPINNQLAEAL*
Ga0153984_10278643F086400GAGLQEGGVLSYPTLFLVVTVYCLLLRIAETISFAISFPVVIVEGDCQLIHGMEGGGFSLFLVCYQILKAIWQSLVKAMA*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.