NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137313_1000031

Scaffold Ga0137313_1000031


Overview

Basic Information
Taxon OID3300011403 Open in IMG/M
Scaffold IDGa0137313_1000031 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT166_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)47128
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (84.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8896Long. (o)-106.9084Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025043Metagenome / Metatranscriptome203Y
F026598Metagenome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0137313_100003112F026598GGAGMPIIQFSDRDLLRGKVVEPAWYLVTINNIGEAPSKDGGSTNYPVEGSIVKNADSGSEEYAGVPLDWNFNSKAIGFAVGFLAAFGVDVKAGARFDLANAVGKQVEVFVENGEWQGRMVNRVNHKYRALRG*
Ga0137313_100003131F025043N/AMDKSTVASILPKRIVERKATCQPGTFELNPGTFENPSVLVVGPSSWWREVDENQPLLEIPVSSIQIADSIVRDYANGLLACNMADQMPGLFYIPGEFTVEKLKKEHTALLLSAQAKQKKWFLELVRIADILWSRSNGNPLSISDDARLACRELNITNKPWLGDAQQAELVRCIACGSLRNAHFPICQTCKAIADPELAKKLGLTFAT*
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