NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137424_1014425

Scaffold Ga0137424_1014425


Overview

Basic Information
Taxon OID3300011412 Open in IMG/M
Scaffold IDGa0137424_1014425 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT620_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1118
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8896Long. (o)-106.9081Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002359Metagenome / Metatranscriptome567Y
F031274Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0137424_10144251F002359AGGAGMSTPYEVADMMIGVRNMIEAADLRVGDQVLLLADTRSDKTTLEALTAGLRFFGAEPMTMVTEPIARYGEVPAAVMEAMHASDVAIWVWPVFITFTPTHRGLGRKREESGTQLHEARMKPYHIYFEGNGGLLARDYAKFPNKVLWKLAEKVREVVAPGKV
Ga0137424_10144252F031274N/AVGFGAQRLAALQAGSVDAVPLGAGDFAQLKQPKGHMLGDTEKEIRFAYVGLAVASKLIARQPELVEKYLRSVIKGREYARRYREQTITILGKYTQRKREFNEVDYDSTLPVLTPEGWVGDDVIKEDVAMRAELVSVSVPSDYGKFFDYSLVKNIYRELKASGWKPAP*
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