NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137436_1012588

Scaffold Ga0137436_1012588


Overview

Basic Information
Taxon OID3300011423 Open in IMG/M
Scaffold IDGa0137436_1012588 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2080
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9778Long. (o)-107.003Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015950Metagenome / Metatranscriptome251Y

Sequences

Protein IDFamilyRBSSequence
Ga0137436_10125882F015950N/AMVGASTRHVDPGATLRIHSVVGGEIDKAENVLRRYLVVMGVDPALVDAAAKIPSRSFRGLSRGEMERFGIETRGVYETPWFASHGPAGEFTLLKSVTYPTEGTGDETRTVGLACSPFRPSIRFMYHQELTAKERRTPPMIRAKIGDNLIELTTLNPQKNLAAKSFDLELWQLQSAIEIGSFEITEMLDQSVIKKPSLVVRFSTLGLSTNIVALESKCASKSNQNQ*
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Institute for Fundamental Biomedical Research
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