Scaffold Ga0137428_1034673

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0137428_1034673

Scaffold Ga0137428_1034673

Overview

Basic Information
Taxon OID	3300011432 Open in IMG/M
Scaffold ID	Ga0137428_1034673 Open in IMG/M
Source Dataset Name	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT718_2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1300
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter → Hypericibacter terrae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.8896	Long. (^o)	-106.9079	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024268	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137428_10346732	F024268	AGG	MAIAVLTNGSQAVDTTEWSITTDSAGPDAETTDGVFQIFLDVSDMTTGDELQIRIYEKVRSGDTQRIVYQQNLFGPQATPIYVTPGLVLMHGWDCTLDAIAGTITVFWKILQVS*
Ga0137428_10346733	F024268	AGGA	MAIAEYVTGTEAVSTTEHSITTDTAGPDVDNTDGIFQVFLDVSDMVTGDELQFRIYNDIDGTQRVMYQTNLVGVQACPIWVSPTFVLVFGWDMTLDAISGTITVLWSIRQVT*

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