NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137443_1000174

Scaffold Ga0137443_1000174


Overview

Basic Information
Taxon OID3300011433 Open in IMG/M
Scaffold IDGa0137443_1000174 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT300_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9852
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.978Long. (o)-107.0026Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002324Metagenome571Y
F013826Metagenome / Metatranscriptome268Y

Sequences

Protein IDFamilyRBSSequence
Ga0137443_10001743F013826N/AMAVCWRCPACSEVSCEEDVGATGNPVACDHCERPFQPHQTLCAVCDAPNPWARRDSLHFLCRQCGTTQTYFRGATAIASPSRGPGAA*
Ga0137443_10001744F002324GGAGGMGEIRLFQICYEGELTAGVSHAMRRLGAEPNFDQSWYVWLSEERHAAPLVRWLRSQIDDDARLLVACSQFTVARDFLLIRHSLTPDADYSELHDAIHRLGVLVELPFESTFVIQSDDRTDVQTLGLALGELCPDDALMVTGISHDWAYSDAGVSQMCVAAAADALQFRTF*

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