Scaffold Ga0137463_1222098

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0137463_1222098

Scaffold Ga0137463_1222098

Overview

Basic Information
Taxon OID	3300011444 Open in IMG/M
Scaffold ID	Ga0137463_1222098 Open in IMG/M
Source Dataset Name	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	706
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9776	Long. (^o)	-107.0024	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007516	Metagenome / Metatranscriptome	349	Y
F013724	Metagenome	269	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137463_12220981	F013724	N/A	LLDSRRTIEYRYFDSSLDPARLQANIKLACWITKRASTLPDSAIPTERVRLGSHADGQVTDSGDGLLRRFADTIFVRPQDKLKLYWLFQRSAWQPARRVA*
Ga0137463_12220982	F007516	AGCAG	MRMLFQPLGNGTFHRACEADSFRGLVAAMLDDPAYESGDVETRLVNRLRLADELVLLAGIENEPSLLIGDRDADLTINVASDERFIRSLDRLSLASLEPTLSAVGTRT*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.