Scaffold Ga0120086_100130

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0120086_100130

Scaffold Ga0120086_100130

Overview

Basic Information
Taxon OID	3300011738 Open in IMG/M
Scaffold ID	Ga0120086_100130 Open in IMG/M
Source Dataset Name	Mine pit pond microbial communities from Vermont, USA - 1M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Vermont
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13784
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Geologic → Mine → Unclassified → Mine Pit Pond → Mine Pit Pond Microbial Communities From Vermont, Usa

Source Dataset Sampling Location
Location Name	USA: Vermont
Coordinates	Lat. (^o)	43.727094	Long. (^o)	-72.425964	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000843	Metagenome / Metatranscriptome	864	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120086_1001306	F000843	N/A	MPLYHITPNQLPQVWPTAAPLLQKAIDLDPSAITIEQVEYAVRTGKTFLLVWEEPDVGITGAVTLEFVDYPRERVAHVNLMGGKSIVRTHVFAEAMDWMRAYGATKAQCWARGTLVQMYEKMGMENTHQVMRITL*

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