Scaffold Ga0120090_117629

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0120090_117629

Scaffold Ga0120090_117629

Overview

Basic Information
Taxon OID	3300011918 Open in IMG/M
Scaffold ID	Ga0120090_117629 Open in IMG/M
Source Dataset Name	Mine pit pond microbial communities from Vermont, USA - 2S
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Vermont
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	638
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Geologic → Mine → Unclassified → Mine Pit Pond → Mine Pit Pond Microbial Communities From Vermont, Usa

Source Dataset Sampling Location
Location Name	USA: Vermont
Coordinates	Lat. (^o)	43.727094	Long. (^o)	-72.425964	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035630	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120090_1176291	F035630	N/A	DCKEVCVSSQSQVNVGADAGPSSQSQVNIGAGPRPSSQDGVSQLKEPVPLAIPQLNRLVEASFVRDESSASNADVPVIPSQLKVTHQILRHWEPFRDLKLRFAGSRRAEQLSLRLQQRIVATVEDSVLRTEMAGLESQEEDASQRVLFYKPMAWLGQIRPHRRDESWSAGLWQTFFSTSMGAQIPVIAEKPLATCGCKKFQLDPLGDHLSTC

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.