NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120090_123648

Scaffold Ga0120090_123648


Overview

Basic Information
Taxon OID3300011918 Open in IMG/M
Scaffold IDGa0120090_123648 Open in IMG/M
Source Dataset NameMine pit pond microbial communities from Vermont, USA - 2S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Vermont
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)508
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Geologic → Mine → Unclassified → Mine Pit Pond → Mine Pit Pond Microbial Communities From Vermont, Usa

Source Dataset Sampling Location
Location NameUSA: Vermont
CoordinatesLat. (o)43.727094Long. (o)-72.425964Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000843Metagenome / Metatranscriptome864Y
F002995Metagenome / Metatranscriptome514Y

Sequences

Protein IDFamilyRBSSequence
Ga0120090_1236481F002995N/ATEPGARKLYAMMDRVQKARRKTVGKDKVANNPRADKYLPA*
Ga0120090_1236482F000843N/AMPLYHITPNQLPQVWPTAAPLLQKAIDLDPSAITIEQVEYAVRTGKTFLLVWEEPDVGITGAVTLEFVDYPRERVAHVNLMGGKSIVRTHVFAEAMDWMRAYGATKAQCWARGTLVQMYEKMGMENT

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