Scaffold Ga0119773_1005850

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0119773_1005850

Scaffold Ga0119773_1005850

Overview

Basic Information
Taxon OID	3300011982 Open in IMG/M
Scaffold ID	Ga0119773_1005850 Open in IMG/M
Source Dataset Name	Human oral microbial communities from Beijing, China - VLP3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Institute of Life Science, Chinese Academy of Sciences
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3465
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Human Oral → Human Oral Microbial Communities From Beijing, China

Source Dataset Sampling Location
Location Name	Beijing, China
Coordinates	Lat. (^o)	39.9	Long. (^o)	116.3	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F049707	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119773_10058504	F049707	AGGAG	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFAERWAEYDETGWTVWYFRLVDGGVMTFSSREWEQKDDVNHLTTIWMKPSLYDIERKEN*

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