NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0119931_1000226

Scaffold Ga0119931_1000226


Overview

Basic Information
Taxon OID3300011984 Open in IMG/M
Scaffold IDGa0119931_1000226 Open in IMG/M
Source Dataset NameFreshwater microbial communities from drinking water treatment plant - The University of Hong Kong - Raw_water_201107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hong Kong
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6816
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Drinking Water Treatment Plant → Freshwater Microbial Communities From Drinking Water Treatment Plant - The University Of Hong Kong

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043476Metagenome156N
F075872Metagenome118N
F078327Metagenome116N
F090574Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0119931_10002263F078327N/AMSNLLLILPFVLSMVYMMADFHHSLLWYISFCALPVIYLCIFAYLKKTNELNKEDDTYTF
Ga0119931_10002266F043476AGGAGGMLTLPTNIDKAEIEAFVNHVTAEVINGHVDPLSVHIRCKAVVKALEAIIELTEELAKDTAATYGKGEFKFHGASVQLREPRDVPDFNHDPVCVELADRLKARHELVKTAFKMASTAAIVDPNTGEVVPVVPVKPAKTTLTVTFR*
Ga0119931_10002267F090574N/AMTQFERDEAMMSLIHHNMQLGKIVTLVGQLFQNVSPEVSARLYPVWAEAYRSALQEMQKAYNLGVTEERTKCVAMMSKLNQTNQ*
Ga0119931_10002268F075872N/AMSRERQFSHYYTVPHNGGTIDIEVYIQYESTNWNQESTGDIDVIDAWVSSFKYIKLDITTPKVKVGELPPVLFEWKKAVMSDSETESAQAWMDQTPLDFFHDAAFQNECDIYNEPPLSLQP*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.