NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119795_1002082

Scaffold Ga0119795_1002082


Overview

Basic Information
Taxon OID3300011986 Open in IMG/M
Scaffold IDGa0119795_1002082 Open in IMG/M
Source Dataset NameHuman oral microbial communities from Los Angeles, CA, USA - S12-03-R
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of California, Los Angeles
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9923
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: Los Angeles
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070224Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0119795_10020822F070224N/AMKRLLFLLLTLPHCTAWSQRYNAPDSIYIIRSGIYIPPVSGEPIYLLASPLRPVKPRGSKKRTRDWVKVDFSDENNIIIVNVGDPLVIENFFAYYAAESPKMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRTLGEVDRWQHPHLFVIEHDKKASRYYKYRIALVIYIDYHHPEAYTVH*
Ga0119795_10020823F070224GAGMRRLLFLLLTLLHCTAWSQVYNAPDSLYVVISGVYIPPISGEPIYLLASPLRPVKPRGSKKRTRDWVKVDFSEDNNFMVVGSGDSLVIENFFAYYAAGFPEMKEYELYYKGTGEEITKEDFNSIKFTRMPTALREIKRYKLPRTRRTTGEVDRWQHPHLFVVEHDKKASRYYKYRIALVIYIDYDHPEAHMIH*
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