NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120182_1000271

Scaffold Ga0120182_1000271


Overview

Basic Information
Taxon OID3300011993 Open in IMG/M
Scaffold IDGa0120182_1000271 Open in IMG/M
Source Dataset NameTerrestrial microbial communites from a soil warming plot in Okalahoma, USA - C1.rep1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1725
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial → Terrestrial Microbial Communites From A Soil Warming Plot In Okalahoma, Usa

Source Dataset Sampling Location
Location NameUSA: Kessler Farm Field Laboratory (KFFL), Okalahoma
CoordinatesLat. (o)34.975667Long. (o)-97.519Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000621Metagenome981Y
F030041Metagenome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0120182_10002711F030041GAGLVQDLIHYTTISKYELDKNEPPLAILLAYARLAGIPVEQIIDDEFELTI*
Ga0120182_10002712F000621N/AMTGSELDRDFFCARRRRQLMPTTKHELLDWLMDVPEDAEIGTDGAGLALLAILGTNVHLLEIGHIPNADELYAEAINQAMMERLRRIDAAGGETETGVIIVTFHGYISGIPSLFSTDFNTAFIFKNTEQAEAFITEFADELHNPQVLDCP*

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