NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120182_1001718

Scaffold Ga0120182_1001718


Overview

Basic Information
Taxon OID3300011993 Open in IMG/M
Scaffold IDGa0120182_1001718 Open in IMG/M
Source Dataset NameTerrestrial microbial communites from a soil warming plot in Okalahoma, USA - C1.rep1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1038
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial → Terrestrial Microbial Communites From A Soil Warming Plot In Okalahoma, Usa

Source Dataset Sampling Location
Location NameUSA: Kessler Farm Field Laboratory (KFFL), Okalahoma
CoordinatesLat. (o)34.975667Long. (o)-97.519Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010589Metagenome / Metatranscriptome301Y

Sequences

Protein IDFamilyRBSSequence
Ga0120182_10017181F010589N/AMFQNSRTLDILLERFQCTPLGPKLTFWVFSHHFGALKRPFGFAPHTLRLKLVFRVVSRHFVAAPDPL*KSVSGAFNARVYASETISCFVATNMPNPLFQSKTHVLGGSMPFRSRT*HVAKTGIEVHLMHEFMPLEPFLVFLQQTCPIHYFRSKTQVLDGFTPFCCRTRPAAKISIGVHLKHEFVPRKPFLVWSQRTCSIHNFRSKTHVYNSG*YLNALLHSF**QLM*
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