NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120162_1000329

Scaffold Ga0120162_1000329


Overview

Basic Information
Taxon OID3300011997 Open in IMG/M
Scaffold IDGa0120162_1000329 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Nunavut, Canada - A15_80cm_18M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25900
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (32.43%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Axel Heiberg Island, Nunavut
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).8
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006059Metagenome / Metatranscriptome382Y

Sequences

Protein IDFamilyRBSSequence
Ga0120162_100032922F006059N/AMTANELPSKKERQTMHLLFSPVLGSALYIGGGSVGLLLVIIIVVLLVR*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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