Scaffold Ga0119951

Basic Information
Taxon OID	3300012000 Open in IMG/M
Scaffold ID	Ga0119951_1000139 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012000 Open in IMG/M

Scaffold ID

Ga0119951_1000139 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Georgia Institute of Technology

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	50326
Total Scaffold Genes	108 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	82 (75.93%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

50326

Total Scaffold Genes

108 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

82 (75.93%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.21	Long. (^o)	-83.96	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.21

Long. (^o)

-83.96

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000369	Metagenome / Metatranscriptome	1222	Y
F001176	Metagenome / Metatranscriptome	756	Y
F002060	Metagenome / Metatranscriptome	597	Y
F003422	Metagenome / Metatranscriptome	487	Y
F007921	Metagenome / Metatranscriptome	342	Y
F042904	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_100013928	F000369	AGAAG	MEIELADHYDRMNKVVEELLKGNNPTQIATLTGFKRAEVVELIGEWKSVVHNDTASRERAKEAISGADQHYAMLIKEAWKTVEDADQSGQLNVKSNALKLIADIETKRIGMLQQVGLLDNAEIATQIAETERKQEVLVKILKDVTTSCPKCKLEVAKRLSQITGIIESVVVEEASGI*
Ga0119951_100013949	F002060	N/A	MDLLSVSIAISAAILSGMGTAIISGIKESKREKTRQAEREHDHLKLELKDLKIQLYQVERDLTEWKDKYYSAIQELIVVKAELEETLIKISLIDVDFHTHED*
Ga0119951_100013954	F042904	N/A	MADQQTVLEGIIEDVATDLYTKWTAAMPEEEKNEVAFRAMASNAQETTFFVVQNFMNRFNAAADELKDK*
Ga0119951_100013962	F001176	GGA	MSMDGTGMTPPPQSSAAGAVNSTEVGRKKPQQGKFRSGIQDQRAVTKIDTNKHGIRRETTTGGPKKTGRKKV*
Ga0119951_100013965	F007921	GGAG	MIEWLVNRIFWWTPLREAMFDEVHMYDELAERIKEYKEEGPTNLTWAEGDTWYGWNYNPEKNRYYFDDIGNKSLMGLWEDQWLREAKDNESR*
Ga0119951_100013984	F000311	GAG	MYFELTAPDRLSMEMAYWDAQMIGLDPQAMTPLTFNIGTGSIEKVSRLRDKYNLIESYMSDYEPTGYTGR*
Ga0119951_100013985	F003422	N/A	MTNELVSSVYTFVCDPDECDCLIQVTSSDGFGFPSGVVELTCPCGRKTTLVSVEHARIPSTTQTKGNTMDGMTTENLPLSDSEKYNPDLLVTYKVLNGYSDATYATDKVRNIEWDLHNSRTNSKAVSSLQNKIGLVKDIISEAYADSEDQETLQAIAEALEIELVKEIEWSASIEVSGVISVNLLEDTHFDLQYEIEDAIYADSHNGNIQVNDQEICNVRENC*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119951_1000139

Overview

Ecosystem & Geography

Associated Families

Sequences