NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119951_1000676

Scaffold Ga0119951_1000676


Overview

Basic Information
Taxon OID3300012000 Open in IMG/M
Scaffold IDGa0119951_1000676 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21916
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)63 (92.65%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040628Metagenome161Y
F041160Metagenome160Y
F073469Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0119951_100067610F041160AGGAGMASKNVKVIEVSQVDGKLTVVGTVGETPFTASPFQWGSKMLMKVEAEGLDRGSRIAIGHAAKKALKVAELALPEAVLKRPRKPKAEPVQAESAEAVVESDVELTTLDEALTES*
Ga0119951_100067621F040628AGGAGGMRHFIFLIGSTDDFESLEDLKNTYFNGNDTYRNMSVFPVSLSEVCQVAGYDTLEEIATLIGRGEAMTEGWCLDDTLSTLLEA*
Ga0119951_100067628F073469AGGAGGMARSLKDVNSKHRVKRTLETIRLLRGFDRAAHFAAGGTPADWRGRSDVRPDKRKDGNRRACRGPVRDD*
Ga0119951_100067649F041160AGGAGGMAKDIKVTEVVVVDGKPVVRGTVGEVPFEAATKQWGSKMLMNVAAEGLDRGTRIAIGHAAKRAVKAAQMVLPEAVLKRPRKAKAEEAVVEAAPAVEAVEGGVELESLDAALEAV*
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