NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119951_1004539

Scaffold Ga0119951_1004539


Overview

Basic Information
Taxon OID3300012000 Open in IMG/M
Scaffold IDGa0119951_1004539 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6848
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035302Metagenome172Y
F049622Metagenome146Y
F065780Metagenome / Metatranscriptome127Y
F082668Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0119951_100453910F035302GAGMKRPYTGNKDGLAAGERKGLTVFIKQLCALYPALWNNGSYVNRSMRGKQGVLSVHATGRAVDLSYRFMAKEKRGIPEDGRKQAMEAMDFVVKNADAFGLEAILDYFPMPHGRGWRCDRASWSIYTKPEIHGAPMGDWVHFEISPAMADNPEAMREAFANAVKPVA*
Ga0119951_100453911F049622AGGAMKKAQDIAQRLLSLFMANALAIVTGSAIVGGIPVWKAAALAGFTAVAQVAERLAKASVDGNLTAQEISDAFGGNGKPVAKKRVAK*
Ga0119951_100453912F065780AGGAMKKIKDYFVDNTWTWVGTGLVLITLSGTTFRQALMLTGVGIVIHSVLTLGSKE*
Ga0119951_10045399F082668N/AMSDAFATIVVALISTIGVIIVGLMQLFKKEAREAAIENRQDHAIVQQQLRMIFKTVNRVDDKLDKHLTEHAEGIFNGKTTRRN*
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