NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119951_1020472

Scaffold Ga0119951_1020472


Overview

Basic Information
Taxon OID3300012000 Open in IMG/M
Scaffold IDGa0119951_1020472 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2375
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F001043Metagenome / Metatranscriptome794Y
F001125Metagenome / Metatranscriptome769Y
F002935Metagenome519Y
F006984Metagenome / Metatranscriptome360Y

Sequences

Protein IDFamilyRBSSequence
Ga0119951_10204722F000311N/AMYFELTAPDRLSMEMAYWDAQLMGLDPMALTPLTFNIGTGSIEKVSRIRDKYNLIESYTSDYEPTGYTGR*
Ga0119951_10204723F001043GGAGMSDYKDGFDDGYKFAREEIMEKLAEIDIMDIDSWILDRISEMIEGGKL*
Ga0119951_10204725F001125GGCGGMGDRANFGFRQSNENIIFLYGHWAGHEMLSRLAEAVAAARPRWSDESYATRIAISQLVGQDWNSETGWGLHVNEIGDNEHKVPVIDWTNQTFTLYEEDIETKVFSMSLLDFCTKYSQLIMV*
Ga0119951_10204726F002935AGGMSERTKGYIGQIVDGKKLAVIANDIYRLQYSNDFSECTVDNLLLIELEEKNVFGDSKYALVCSEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKSCLSDKTEDISDYIRVFGSRLDSNCSLWQSKMSVAPATISL*
Ga0119951_10204727F006984AGGAMPNWVYNTLTIQGPKEEIDMIKERLNRPFTLAQETFGMGDISLSGFPTKIQQVTYSNPVFAFFNIHSYKDDGITDEE
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