NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119951_1022298

Scaffold Ga0119951_1022298


Overview

Basic Information
Taxon OID3300012000 Open in IMG/M
Scaffold IDGa0119951_1022298 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2229
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029046Metagenome189Y
F040536Metagenome161N
F090097Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0119951_102229811F090097GGAGGMRKIARKRVSGKQAIHYRNYRRARDRALVRLSQAYPETYKELLELEKVSDDTTGAKWVDIDGSSSLVVVTRTGQREEGIVIESARYVGEGEGDSE*
Ga0119951_10222982F029046GGAGGMGAVERVIQLNEIDTIQDLKLWVEENMTGATVEEGEGGIVIRTNLISTMGGYLHEREKEGE*
Ga0119951_10222989F040536GAGGMSKLGKLIAFHPPKSELKLFYEVVEPNGETRWGGERAFDAISWLHLAPKGSRLLVSGWESEDLDAQPVGQPLDITEMYQLLKGVN*
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