NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119951_1061990

Scaffold Ga0119951_1061990


Overview

Basic Information
Taxon OID3300012000 Open in IMG/M
Scaffold IDGa0119951_1061990 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1012
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001515Metagenome / Metatranscriptome679Y
F001531Metagenome / Metatranscriptome676Y

Sequences

Protein IDFamilyRBSSequence
Ga0119951_10619901F001515AGGVATKSSFDLDFGYGRKGEQLVDELLTGGRTVEVKRDRKWAKTNNLYIETECFFKKIEDWAPSGLGVTEAAYWAFVLEESTLIVPTDALRHAVKEFGREITCNIPPNLSKGFLITVDDLMSATRLYKKAKADELATN*
Ga0119951_10619902F001531AGGMNWQQIEPWEYVITAVASEYHRKFDMVELEDIKQSLYEWFAKHPNKVAEWEKIGNKDAKNLIYRSLRNHALDYCQRWKAKSVGYDVSDVYYYESDVIEALLPAVLRGEYGVTHKLNLGRPGRPSAPSEGGNLSVMMMEIDSAYWKLSKEDRKILFFRYAESMDYKEISNYLSLGSDDAARMRGNRAVKRLVNKLG
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