NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119955_1000403

Scaffold Ga0119955_1000403


Overview

Basic Information
Taxon OID3300012006 Open in IMG/M
Scaffold IDGa0119955_1000403 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24082
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (88.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001562Metagenome / Metatranscriptome670Y
F004840Metagenome / Metatranscriptome421Y
F014142Metagenome / Metatranscriptome265Y
F046368Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0119955_100040310F046368GGAVSKQFKTPIAPPALSSDPTGQVAGEIYYNTVAGALKIFNGSTWSLLTGSGGGGETTTSIQVLGSAPTSPTVGTIYFDTAEQIIKTYNGYIWYDVAGPKELLDHVHYTDGYVRTVDYGNYVANNNYIVSMDGGLANTNYAIVGNDDIFDGGNA*
Ga0119955_100040323F014142AGGAGGMTNLVLEPNHPMSSSNTGDVSIFRLANGNYISRMAYVQMVASEGLISHRYLTPSESMWAISHTA*
Ga0119955_100040328F001562GGCGGMKSQLEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLAEMEDES*
Ga0119955_100040333F004840AGGAMYKITSAYDSNAPHWEQSYENEFGAWENFFLFTDWGFADEYCTVNLYTPTGKCHTRIFYREGRKVVTK*
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