NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119955_1007346

Scaffold Ga0119955_1007346


Overview

Basic Information
Taxon OID3300012006 Open in IMG/M
Scaffold IDGa0119955_1007346 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4412
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010247Metagenome / Metatranscriptome306Y
F013082Metagenome274Y
F013525Metagenome / Metatranscriptome270Y
F086632Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0119955_100734612F086632N/AMKKSVDIGILKGCFDILKKYFIVQEFTSVYKITESEKELYNKLAKIIEGKNVK*
Ga0119955_10073462F013525AGGAMNSIAQDLSFKNPDQIKQELDSVSEQMSEALYTFRRCEEFKKITFSQITLTKKLEKNCSVSEAEKWAYSDKDYATIVEGLLVAEKNYSILKGKYANLQSWVDLYRSWLVTQRDLSR*
Ga0119955_10073465F010247AGGAGMNVQGIVKYVYDNRLAKDGTANKFPNFKFKVGDQEIVLWSSILHPAIAKGKKVSVAVQASKKNGSLFVQTNEKKQPIIQELPLDANTEAKPDTSFNPEELEKELVQVAKDFDADLTVETKKPINKDEYMFVMALAKSAIESGKINVTKEEIDLLIKDLKFLFQINFHN*
Ga0119955_10073468F013082AGGAGMKTVQQEIDRLYLESKLNRYIVSNEASYYYDLCSVQDKTITLDKFYELFPYHNPDINSDYWKQQHQKWKDIWKQDVV*
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