Scaffold Ga0119955

Basic Information
Taxon OID	3300012006 Open in IMG/M
Scaffold ID	Ga0119955_1008377 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012006 Open in IMG/M

Scaffold ID

Ga0119955_1008377 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Georgia Institute of Technology

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4062
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (72.73%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

4062

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (72.73%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.21	Long. (^o)	-83.96	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.21

Long. (^o)

-83.96

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F009266	Metagenome / Metatranscriptome	320	Y
F027179	Metagenome	195	Y
F054036	Metagenome	140	Y
F060914	Metagenome	132	N
F101144	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119955_100837710	F054036	GAGG	MKLDFKVSGTINVPEDAIKHYDVAGKLYALEFNDTMYMLQVCLVAENSDGEYEMIHQYDEMLSNNISDLRYDEAEFVEG*
Ga0119955_10083772	F101144	N/A	MEAKTFTFYSTERHGYVETTRAYLRKLKISKLISPYSRQSGNKVYIEEDGDLSLFCKRHTVAGISIVLKEEEKPQSFFDNMWNYRDDECQDEQFDGFKSEWSLSQRVHFVKPDNIKHVRNSTFETKDGKCLKIVPTFYLDGKALNESQLKKLGIELTTITTGELDYEYEH*
Ga0119955_10083773	F009266	AGGA	MTDKERKILDKEIQYLCEQQDRVKAIREYTNINPHYTFLKEVETIEGLYKWVLENRKKEESTYFSCGTSGWYVVYLRDKKKYKKGEDFRIKIFHTFVWTDNLE*
Ga0119955_10083774	F002398	AGGAG	MIPLISIFLLTSLDPIKNFVSLKTYISENAKIHCHVYFINEDIPDYPRVNVIEKNKFDFFAYLDTIGIEHSQVGSYYFFYRKPK*
Ga0119955_10083775	F060914	AGCAG	LKRLIKVRSDISASIYPIQLFQVDDYFTAEEDGVELFRYKSQHLCSIKAKELIRKRKNEKNAQIIQNIKELKEQGIL*
Ga0119955_10083776	F027179	N/A	MADGLFLYEKENSYVVMDQYDNVLKEFKTSASCSRYILKTLLSRRAAERYAIEEINKSKV
Ga0119955_10083777	F002406	N/A	MENLKWIRAMSDRLRDELSKEYDDDTKDLIIRAFMQGLYQQPAIVEELKSSSLIESDYFEDNDETDLHG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119955_1008377

Overview

Ecosystem & Geography

Associated Families

Sequences