NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120152_1000533

Scaffold Ga0120152_1000533


Overview

Basic Information
Taxon OID3300012011 Open in IMG/M
Scaffold IDGa0120152_1000533 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Nunavut, Canada - A30_65cm_6M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18845
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (52.38%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Axel Heiberg Island, Nunavut
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).65
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020154Metagenome225Y
F093596Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0120152_100053313F093596AGGAGMVVPGRVVRQLAVGVLRVRRRHAARLIFVSVANRGNVTVQLRGCVTALLVRHGHQLARLSPSAQRALLPGARTLITLRYRGPVRGPVTAVVQVRLGPGIRLVERRYRIRL*
Ga0120152_10005336F020154N/AVKVQIIYRGLLSSVLGILDGGTYSVGGSWKPSPRIGMLGGLLPLLTSSVSFRFTAVGGAAGIDDVYLDPMKSS*

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