NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0120152_1168676

Scaffold Ga0120152_1168676


Overview

Basic Information
Taxon OID3300012011 Open in IMG/M
Scaffold IDGa0120152_1168676 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Nunavut, Canada - A30_65cm_6M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)568
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Axel Heiberg Island, Nunavut
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).65
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008193Metagenome / Metatranscriptome337Y

Sequences

Protein IDFamilyRBSSequence
Ga0120152_11686761F008193N/ALSLAVALLCAGAATAGNGPAKFLFRFQGQLTATPANGGVSITVQGGNKPALRAMLGQPVTQTFAYGSSTEFLKWSKGIPTIVQAGDLAAGDYVTVNVRAPRNSDLATIEHQQAGIVGDHGTQLYKPANPLFLFRGTLTTVGSSSVTVHVTGGNHHALRLLIGNSSDQTLAFGDTTIFLLWQGKVPTVID
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.