NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153799_1000243

Scaffold Ga0153799_1000243


Overview

Basic Information
Taxon OID3300012012 Open in IMG/M
Scaffold IDGa0153799_1000243 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18814
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (58.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.581667Long. (o)-79.9225Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F078427Metagenome / Metatranscriptome116Y
F097194Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0153799_10002432F097194N/ALGKVFLVGSWKSYQDLEESLSMPELLQTIESMQMKEKEDRIFLASLQGVDIRGDEKEEKGPTFEDIRLRAMGIEASTDDVVSLQGAIAAEAGFGVGAGLGYSKEQ*
Ga0153799_10002435F000258GGAGMTVNYKLDAMLELRKYIWTKLQAAEIFNADDYYSDNIGEALVPIIPVQQIPDMNQFLSGKDHIVYDKIGVSYDTLWLICNEQILFTVYSTDVSKINEVRNFMIDEFRRMDESAKDVNLSANFNSDKFKFHSIHVDDMSPTEPSQELQGFYSADIILEIKYSRTTNTSGRYT*
Ga0153799_10002436F078427GGAMVKSKGGILKESLVAQISAYVYYNAQVIGKLTTNTGFKNKFREVIFNQLEKDFGEYVDSQARVKPKTLHHVYEWDQAGISESRLFKLNKLNTDGLGFSISYELLPSKTFTKSEGNRRHVFANKASVMEAGMPLKIAPRYSKRLVFETNGYKVFMPEGASVTVKRPGGVGVKNSFMMTYSRFFKSSLVNASIKRSGFQRLFNNSMSKALRVPADIRTVKYTFNPNTISVQADAALISAFGAAL*
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