NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153799_1000456

Scaffold Ga0153799_1000456


Overview

Basic Information
Taxon OID3300012012 Open in IMG/M
Scaffold IDGa0153799_1000456 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13467
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.79%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.581667Long. (o)-79.9225Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022372Metagenome / Metatranscriptome214Y
F050981Metagenome / Metatranscriptome144N
F078382Metagenome / Metatranscriptome116N
F081037Metagenome114N
F083886Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0153799_100045610F081037N/AMPIQTDKIPEVIDRNDIYLLKGHTMETLCKLARRKWDFNQADFFTQEDDKRFAVRIRTDRPAPSFPYTMRSTLLGSDDPYNPKAPLALSVANLDTWQRDRQPKNIDGVVTDGVLITSWIRIYITAGFGTFTQTVFARQEIKDLYGMTYYIGPEVIIETDTTSGSGSAGGGI*
Ga0153799_100045614F022372GGCGGMSTTTITINVAFLTEEQRDAATILFARSGGWQATVDGEPNPVSAEAYGVNMLANYLRSGVASQSAYDAQIAAAQEVADLLDGVTVTIPV*
Ga0153799_100045615F083886N/AMLRNEIFGDLWRGSVGMAGSWLAVISSIHEDIDEVAKTAGMILGCLASLAMFISLCQRIYHNWQTRKWEGVIFKQTDDDLKK*
Ga0153799_100045617F050981GGAGMRWLVIILLSASSVCAQITDDELSKISKEEIVLTIKHLRALTADAIASADRAIASEARVQASLTSATDALMHSQNHLLKVDQDIRNLQAQTEEQTRIAVGAKADAVKAQRLADHRGNLLGWLGAGLLCMLCLRLTSILPPPYGFLLPVAAIPAGYWLARLLL*
Ga0153799_100045618F078382N/AMRQTLDLLVVMFAVLLSRTLWVTIGGLYVVWIVHWSDVATLYTLDNAAQIQSFTQLALCRYGLIGSIVLGYLGFTRGSTGVAGYVIDQLNPKDK*
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