Scaffold Ga0153799_1002358

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153799_1002358

Scaffold Ga0153799_1002358

Overview

Basic Information
Taxon OID	3300012012 Open in IMG/M
Scaffold ID	Ga0153799_1002358 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5127
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location Name	Ontario, Canada
Coordinates	Lat. (^o)	42.581667	Long. (^o)	-79.9225	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011482	Metagenome / Metatranscriptome	290	Y
F020531	Metagenome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153799_100235810	F011482	GAG	MTEKEIQPTLGEVMRRLDDLTMEVKQMNLNVGQTYLRKDVYDSDSERISQAMEHITDRLEKMESRSEWVIRTVGALFISAVVGGSIYIGQLIGI*
Ga0153799_10023586	F020531	N/A	MSLSDLAILIGFIGIYDLRIQVDEMKVRAWAESLDSDLPLEEAKKIVSWHYSNFDTAVNPSHLNREWRRRMADARERERGRLLSLEFEENEKKKATPEFVAQIKKELLDKLNRGKDAPLEEDNGTVAPKS*

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